/******************************************************************************
 *
 *
 *
 * Copyright (C) 1997-2015 by Dimitri van Heesch.
 *
 * Permission to use, copy, modify, and distribute this software and its
 * documentation under the terms of the GNU General Public License is hereby
 * granted. No representations are made about the suitability of this software
 * for any purpose. It is provided "as is" without express or implied warranty.
 * See the GNU General Public License for more details.
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 * Documents produced by Doxygen are derivative works derived from the
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/*! \page arch Doxygen's Internals

<h3>Doxygen's internals</h3>

<B>Note that this section is still under construction!</B>

The following picture shows how source files are processed by Doxygen.

\image html  archoverview.svg "Data flow overview"
\image latex archoverview.eps "Data flow overview" width=14cm

The following sections explain the steps above in more detail.

<h3>Config parser</h3>

The configuration file that controls the settings of a project is parsed
and the settings are stored in the singleton class \c Config
in <code>src/config.h</code>. The parser itself is written using \c flex
and can be found in <code>src/config.l</code>. This parser is also used
directly by Doxywizard, so it is put in a separate library.

Each configuration option has one of 5 possible types: \c String,
\c List, \c Enum, \c Int, or \c Bool. The values of these options are
available through the global functions \c Config_getXXX(), where \c XXX is the
type of the option. The argument of these functions is a string naming
the option as it appears in the configuration file. For instance:
\c Config_getBool(GENERATE_TESTLIST) returns a reference to a boolean
value that is \c true if the test list was enabled in the configuration file.

The function \c readConfiguration() in \c src/doxygen.cpp
reads the command line options and then calls the configuration parser.

<h3>C Preprocessor</h3>

The input files mentioned in the configuration file are (by default) fed to the
C Preprocessor (after being piped through a user defined filter if available).

The way the preprocessor works differs somewhat from a standard C Preprocessor.
By default it does not do macro expansion, although it can be configured to
expand all macros. Typical usage is to only expand a user specified set
of macros. This is to allow macro names to appear in the type of
function parameters for instance.

Another difference is that the preprocessor parses, but not actually includes
code when it encounters a \c \#include (with the exception of \c \#include
found inside { ... } blocks). The reasons behind this deviation from
the standard is to prevent feeding multiple definitions of the
same functions/classes to Doxygen's parser. If all source files would
include a common header file for instance, the class and type
definitions (and their documentation) would be present in each
translation unit.

The preprocessor is written using \c flex and can be found in
\c src/pre.l. For condition blocks (\c \#if) evaluation of constant expressions
is needed. For this a \c yacc based parser is used, which can be found
in \c src/constexp.y and \c src/constexp.l.

The preprocessor is invoked for each file using the \c preprocessFile()
function declared in \c src/pre.h, and will append the preprocessed result
to a character buffer. The format of the character buffer is

\verbatim
0x06 file name 1
0x06 preprocessed contents of file 1
...
0x06 file name n
0x06 preprocessed contents of file n
\endverbatim

<h3>Language parser</h3>

The preprocessed input buffer is fed to the language parser, which is
implemented as a big state machine using \c flex. It can be found
in the file \c src/scanner.l. There is one parser for all
languages (C/C++/Java/IDL). The state variables \c insideIDL
and \c insideJava are used at some places for language specific choices.

The task of the parser is to convert the input buffer into a tree of entries
(basically an abstract syntax tree). An entry is defined in \c src/entry.h
and is a blob of loosely structured information. The most important field
is \c section which specifies the kind of information contained in the entry.

Possible improvements for future versions:
 - Use one scanner/parser per language instead of one big scanner.
 - Move the first pass parsing of documentation blocks to a separate module.
 - Parse defines (these are currently gathered by the preprocessor, and
   ignored by the language parser).

<h3>Data organizer</h3>

This step consists of many smaller steps, that build
dictionaries of the extracted classes, files, namespaces,
variables, functions, packages, pages, and groups. Besides building
dictionaries, during this step relations (such as inheritance relations),
between the extracted entities are computed.

Each step has a function defined in \c src/doxygen.cpp, which operates
on the tree of entries, built during language parsing. Look at the
"Gathering information" part of \c parseInput() for details.

The result of this step is a number of dictionaries, which can be
found in the Doxygen "namespace" defined in \c src/doxygen.h. Most
elements of these dictionaries are derived from the class \c Definition;
The class \c MemberDef, for instance, holds all information for a member.
An instance of such a class can be part of a file ( class \c FileDef ),
a class ( class \c ClassDef ), a namespace ( class \c NamespaceDef ),
a group ( class \c GroupDef ), or a Java package ( class \c PackageDef ).

<h3>Tag file parser</h3>

If tag files are specified in the configuration file, these are parsed
by a SAX based XML parser, which can be found in \c src/tagreader.cpp.
The result of parsing a tag file is the insertion of \c Entry objects in the
entry tree. The field \c Entry::tagInfo is used to mark the entry as
external, and holds information about the tag file.

<h3>Documentation parser</h3>

Special comment blocks are stored as strings in the entities that they
document. There is a string for the brief description and a string
for the detailed description. The documentation parser reads these
strings and executes the commands it finds in it (this is the second pass
in parsing the documentation). It writes the result directly to the output
generators.

The parser is written in C++ and can be found in \c src/docparser.cpp. The
tokens that are eaten by the parser come from \c src/doctokenizer.l.
Code fragments found in the comment blocks are passed on to the source parser.

The main entry point for the documentation parser is \c validatingParseDoc()
declared in \c src/docparser.h.  For simple texts with special
commands \c validatingParseText() is used.

<h3>Source parser</h3>

If source browsing is enabled or if code fragments are encountered in the
documentation, the source parser is invoked.

The code parser tries to cross-reference to source code it parses with
documented entities. It also does syntax highlighting of the sources. The
output is directly written to the output generators.

The main entry point for the code parser is \c parseCode()
declared in \c src/code.h.

<h3>Output generators</h3>

After data is gathered and cross-referenced, Doxygen generates
output in various formats. For this it uses the methods provided by
the abstract class \c OutputGenerator. In order to generate output
for multiple formats at once, the methods of \c OutputList are called
instead. This class maintains a list of concrete output generators,
where each method called is delegated to all generators in the list.

To allow small deviations in what is written to the output for each
concrete output generator, it is possible to temporarily disable certain
generators. The OutputList class contains various \c disable() and \c enable()
methods for this. The methods \c OutputList::pushGeneratorState() and
\c OutputList::popGeneratorState() are used to temporarily save the
set of enabled/disabled output generators on a stack.

The XML is generated directly from the gathered data structures. In the
future XML will be used as an intermediate language (IL). The output
generators will then use this IL as a starting point to generate the
specific output formats. The advantage of having an IL is that various
independently developed tools written in various languages,
could extract information from the XML output. Possible tools could be:
- an interactive source browser
- a class diagram generator
- computing code metrics.

<h3>Debugging</h3>

Since Doxygen uses a lot of \c flex code it is important to understand
how \c flex works (for this one should read the \c man page)
and to understand what it is doing when \c flex is parsing some input.
Fortunately, when \c flex is used with the `-d` option it outputs what rules
matched. This makes it quite easy to follow what is going on for a
particular input fragment.

To make it easier to toggle debug information for a given \c flex file I
wrote the following \c perl script, which automatically adds or removes `-d`
from the correct line in the \c Makefile:

\verbatim
#!/usr/bin/perl

$file = shift @ARGV;
print "Toggle debugging mode for $file\n";
if (!-e "../src/${file}.l")
{
  print STDERR "Error: file ../src/${file}.l does not exist!\n";
  exit 1;
}
system("touch ../src/${file}.l");
unless (rename "src/CMakeFiles/doxymain.dir/build.make","src/CMakeFiles/doxymain.dir/build.make.old") {
  print STDERR "Error: cannot rename src/CMakeFiles/doxymain.dir/build.make!\n";
  exit 1;
}
if (open(F,"<src/CMakeFiles/doxymain.dir/build.make.old")) {
  unless (open(G,">src/CMakeFiles/doxymain.dir/build.make")) {
    print STDERR "Error: opening file build.make for writing\n";
    exit 1;
  }
  print "Processing build.make...\n";
  while (<F>) {
    if ( s/flex \$\(LEX_FLAGS\) -d(.*) ${file}.l/flex \$(LEX_FLAGS)$1 ${file}.l/ ) {
      print "Disabling debug info for $file\n";
    }
    elsif ( s/flex \$\(LEX_FLAGS\)(.*) ${file}.l$/flex \$(LEX_FLAGS) -d$1 ${file}.l/ ) {
      print "Enabling debug info for $file.l\n";
    }
    print G "$_";
  }
  close F;
  unlink "src/CMakeFiles/doxymain.dir/build.make.old";
}
else {
  print STDERR "Warning file src/CMakeFiles/doxymain.dir/build.make does not exist!\n";
}

# touch the file
$now = time;
utime $now, $now, $file;
\endverbatim
Another way to get rules matching / debugging information
from the \c flex code is setting \c LEX_FLAGS with \c make (`make LEX_FLAGS=-d`).

By default a debug version of Doxygen (i.e. an executable created with the \c CMake
setting `-DCMAKE_BUILD_TYPE=Debug`) will automatically have the \c flex debugging
information for all `flex codefile`s.

Note that by running Doxygen with `-d lex` you get information about which
`flex codefile` is used.
To see the information of the flex parser, which is compiled with the flex debug option,
you have to specify `-d lex:<flex codefile>` when running Doxygen.

Note that the information with respect to the lex parsing goes to `stderr` and that the other
debug output goes by default to `stdout` unless one uses `-d stderr`.

<h3>Testing</h3>

Doxygen has a small set of tests available to test code integrity.
The tests can be run by means of the command `make tests`. When only one or a
few tests are required one can set the variable \c TEST_FLAGS when running the
test e.g. `make TEST_FLAGS="--id 5" tests` or for multiple tests
`make TEST_FLAGS="--id 5 --id 7" tests`. For a full set of possibilities give the
command `make TEST_FLAGS="--help" tests`. It is also possible to specify the
`TEST_FLAGS` as an environment variable (works also for testing through Visual
Studio projects), e.g. `setenv TEST_FLAGS "--id 5 --id 7"` and `make tests`.

<h3>Doxyfile differences</h3>

In case one has to communicate through e.g. a forum the configuration settings that
are different from the standard Doxygen configuration file settings one can run the
Doxygen command: with the `-x` option and the name of the configuration file (default
is `Doxyfile`). The output will be a list of the not default settings (in `Doxyfile`
format). Alternatively also `-x_noenv` is possible which is identical to the `-x`
option but without replacing the environment variables and the \c CMake type replacement variables.

\htmlonly
Return to the <a href="index.html">index</a>.
\endhtmlonly

*/


